CBL44380.1 protein (gamma proteobacterium HdN1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBL44380.1

Hypothetical protein; silverDB:HdN1F1035. (79 aa)

Predicted Functional Partners:

CBL44377.1

0.701

CBL44378.1

0.701

msrQ

0.701

mauL

0.404

Your Current Organism:

gamma proteobacterium HdN1

NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBL44377.1	CBL44378.1	HDN1F_07940	HDN1F_07950	Putative cytochrome c; silverDB:HdN1F1031.	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	0.880
CBL44377.1	CBL44380.1	HDN1F_07940	HDN1F_07970	Putative cytochrome c; silverDB:HdN1F1031.	Hypothetical protein; silverDB:HdN1F1035.	0.701
CBL44377.1	mauL	HDN1F_07940	HDN1F_07930	Putative cytochrome c; silverDB:HdN1F1031.	Methylamine utilization protein; silverDB:HdN1F1029.	0.713
CBL44377.1	msrQ	HDN1F_07940	HDN1F_07960	Putative cytochrome c; silverDB:HdN1F1031.	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	0.773
CBL44378.1	CBL44377.1	HDN1F_07950	HDN1F_07940	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	Putative cytochrome c; silverDB:HdN1F1031.	0.880
CBL44378.1	CBL44380.1	HDN1F_07950	HDN1F_07970	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	Hypothetical protein; silverDB:HdN1F1035.	0.701
CBL44378.1	mauL	HDN1F_07950	HDN1F_07930	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	Methylamine utilization protein; silverDB:HdN1F1029.	0.438
CBL44378.1	msrQ	HDN1F_07950	HDN1F_07960	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	0.994
CBL44380.1	CBL44377.1	HDN1F_07970	HDN1F_07940	Hypothetical protein; silverDB:HdN1F1035.	Putative cytochrome c; silverDB:HdN1F1031.	0.701
CBL44380.1	CBL44378.1	HDN1F_07970	HDN1F_07950	Hypothetical protein; silverDB:HdN1F1035.	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	0.701
CBL44380.1	mauL	HDN1F_07970	HDN1F_07930	Hypothetical protein; silverDB:HdN1F1035.	Methylamine utilization protein; silverDB:HdN1F1029.	0.404
CBL44380.1	msrQ	HDN1F_07970	HDN1F_07960	Hypothetical protein; silverDB:HdN1F1035.	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	0.701
mauL	CBL44377.1	HDN1F_07930	HDN1F_07940	Methylamine utilization protein; silverDB:HdN1F1029.	Putative cytochrome c; silverDB:HdN1F1031.	0.713
mauL	CBL44378.1	HDN1F_07930	HDN1F_07950	Methylamine utilization protein; silverDB:HdN1F1029.	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	0.438
mauL	CBL44380.1	HDN1F_07930	HDN1F_07970	Methylamine utilization protein; silverDB:HdN1F1029.	Hypothetical protein; silverDB:HdN1F1035.	0.404
mauL	msrQ	HDN1F_07930	HDN1F_07960	Methylamine utilization protein; silverDB:HdN1F1029.	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	0.438
msrQ	CBL44377.1	HDN1F_07960	HDN1F_07940	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	Putative cytochrome c; silverDB:HdN1F1031.	0.773
msrQ	CBL44378.1	HDN1F_07960	HDN1F_07950	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	Oxidoreductase, molybdopterin-binding protein; silverDB:HdN1F1032.	0.994
msrQ	CBL44380.1	HDN1F_07960	HDN1F_07970	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	Hypothetical protein; silverDB:HdN1F1035.	0.701
msrQ	mauL	HDN1F_07960	HDN1F_07930	Protein of unknown function UPF0191; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit [...]	Methylamine utilization protein; silverDB:HdN1F1029.	0.438