STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL44785.1Major facilitator superfamily protein; silverDB:HdN1F1577. (399 aa)    
Predicted Functional Partners:
CBL46391.1
Signal transducer; silverDB:HdN1F3765.
  
  
 
0.927
CBL44786.1
Conserved hypothetical protein; silverDB:HdN1F1578.
       0.680
rlmM
Predicted SAM-dependent methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.614
CBL44787.1
Hypothetical protein; silverDB:HdN1F1580.
  
    0.558
CBL46588.1
Chorismate mutase family protein; silverDB:HdN1F4028.
  
  
 0.555
CBL45095.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1998.
  
  
 0.554
CBL45097.1
Non-ribosomal peptide synthase; silverDB:HdN1F2001.
  
  
 0.544
CBL45096.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1999.
  
  
 0.506
hexC
Putative N-acetyl-glucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
   
 0.460
glsI
Ferredoxin-dependent glutamate synthase; silverDB:HdN1F4117.
     
 0.411
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.