STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL44805.1Conserved hypothetical protein; silverDB:HdN1F1607. (259 aa)    
Predicted Functional Partners:
CBL44803.1
Conserved hypothetical protein; silverDB:HdN1F1605.
 
     0.825
CBL44802.1
Similar to sigma factor SigB regulation protein; silverDB:HdN1F1603.
 
     0.794
CBL44806.1
Hypothetical protein; silverDB:HdN1F1608.
       0.773
pknB
Hypothetical protein; silverDB:HdN1F1609.
       0.773
odc
Ornithine decarboxylase; silverDB:HdN1F1606; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
       0.769
CBL44801.1
Hypothetical protein; silverDB:HdN1F1602.
       0.592
CBL44808.1
Conserved hypothetical protein; silverDB:HdN1F1610.
       0.565
CBL44809.1
Hypothetical protein; silverDB:HdN1F1612.
       0.547
CBL44810.1
Hypothetical protein; silverDB:HdN1F1613.
       0.547
CBL44811.1
Hypothetical protein; silverDB:HdN1F1614.
       0.547
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.