STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL45329.1Short-chain dehydrogenase; silverDB:HdN1F2307; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (285 aa)    
Predicted Functional Partners:
CBL45328.1
Conserved hypothetical protein; silverDB:HdN1F2306.
 
     0.846
CBL45330.1
Putative monooxygenase; silverDB:HdN1F2308.
 
   
 0.829
CBL45331.1
Alpha/beta hydrolase fold; silverDB:HdN1F2312.
 
    0.749
CBL47152.1
Short chain dehydrogenase; silverDB:HdN1F4750.
  
 
   0.670
CBL45097.1
Non-ribosomal peptide synthase; silverDB:HdN1F2001.
  
 
 0.598
CBL45319.1
Conserved hypothetical protein; silverDB:HdN1F2293.
  
     0.586
CBL47371.1
Predicted metal-dependent hydrolase; silverDB:HdN1F5047.
  
     0.579
CBL46529.1
Hypothetical protein; silverDB:HdN1F3966.
  
     0.573
CBL45341.1
Monooxygenase; silverDB:HdN1F2323.
 
   
 0.560
CBL47251.1
Putative monooxygenase; silverDB:HdN1F4883.
 
   
 0.554
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.