Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBL44723.1 | CBL44943.1 | HDN1F_11400 | HDN1F_13600 | Putative chemotaxis protein; silverDB:HdN1F1493. | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | 0.910 |
CBL44723.1 | CBL45071.1 | HDN1F_11400 | HDN1F_14880 | Putative chemotaxis protein; silverDB:HdN1F1493. | CheW-like protein; silverDB:HdN1F1967. | 0.838 |
CBL44723.1 | CBL45072.1 | HDN1F_11400 | HDN1F_14890 | Putative chemotaxis protein; silverDB:HdN1F1493. | CheW-like protein; silverDB:HdN1F1969. | 0.835 |
CBL44723.1 | CBL45499.1 | HDN1F_11400 | HDN1F_19160 | Putative chemotaxis protein; silverDB:HdN1F1493. | Chemotaxis sensory transducer; silverDB:HdN1F2527. | 0.910 |
CBL44723.1 | CBL45500.1 | HDN1F_11400 | HDN1F_19170 | Putative chemotaxis protein; silverDB:HdN1F1493. | CheW-like protein; silverDB:HdN1F2528. | 0.803 |
CBL44723.1 | CBL45601.1 | HDN1F_11400 | HDN1F_20180 | Putative chemotaxis protein; silverDB:HdN1F1493. | Hypothetical protein; silverDB:HdN1F2662. | 0.996 |
CBL44723.1 | cheB1 | HDN1F_11400 | HDN1F_13580 | Putative chemotaxis protein; silverDB:HdN1F1493. | Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.832 |
CBL44723.1 | cheB2 | HDN1F_11400 | HDN1F_14830 | Putative chemotaxis protein; silverDB:HdN1F1493. | Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.919 |
CBL44723.1 | cheB4 | HDN1F_11400 | HDN1F_37170 | Putative chemotaxis protein; silverDB:HdN1F1493. | Protein-glutamate methylesterase; silverDB:HdN1F4949. | 0.832 |
CBL44723.1 | cheW | HDN1F_11400 | HDN1F_01800 | Putative chemotaxis protein; silverDB:HdN1F1493. | CheW-like protein; silverDB:HdN1F241. | 0.803 |
CBL44943.1 | CBL44723.1 | HDN1F_13600 | HDN1F_11400 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | Putative chemotaxis protein; silverDB:HdN1F1493. | 0.910 |
CBL44943.1 | CBL45071.1 | HDN1F_13600 | HDN1F_14880 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | CheW-like protein; silverDB:HdN1F1967. | 0.934 |
CBL44943.1 | CBL45072.1 | HDN1F_13600 | HDN1F_14890 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | CheW-like protein; silverDB:HdN1F1969. | 0.946 |
CBL44943.1 | CBL45500.1 | HDN1F_13600 | HDN1F_19170 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | CheW-like protein; silverDB:HdN1F2528. | 0.961 |
CBL44943.1 | CBL45601.1 | HDN1F_13600 | HDN1F_20180 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | Hypothetical protein; silverDB:HdN1F2662. | 0.958 |
CBL44943.1 | cheB1 | HDN1F_13600 | HDN1F_13580 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.970 |
CBL44943.1 | cheB2 | HDN1F_13600 | HDN1F_14830 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.909 |
CBL44943.1 | cheB4 | HDN1F_13600 | HDN1F_37170 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | Protein-glutamate methylesterase; silverDB:HdN1F4949. | 0.828 |
CBL44943.1 | cheW | HDN1F_13600 | HDN1F_01800 | Predicted methyl-accepting chemotaxis protein; silverDB:HdN1F1798. | CheW-like protein; silverDB:HdN1F241. | 0.961 |
CBL45071.1 | CBL44723.1 | HDN1F_14880 | HDN1F_11400 | CheW-like protein; silverDB:HdN1F1967. | Putative chemotaxis protein; silverDB:HdN1F1493. | 0.838 |
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