STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL45920.1Hypothetical protein; silverDB:HdN1F3107. (700 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthetase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.870
CBL45187.1
Hypothetical protein; silverDB:HdN1F2126.
  
     0.750
aroK
Shikimate kinase I protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.721
pilQ
Fimbrial type-IV assembly protein, outer membran secretin; silverDB:HdN1F3103.
     
 0.717
pilM
Type IV fimbrial biogenesis protein, involved in pilus assembly; silverDB:HdN1F3099.
  
    0.672
pilN
Type IV fimbrial biogenesis protein, involved in pilus assembly; silverDB:HdN1F3100.
       0.664
pilO
Fimbrial type-IV assembly protein, involved in pilus assembly; silverDB:HdN1F3101.
       0.664
pilP
Type IV fimbrial biogenesis protein, involved in pilus assembly; silverDB:HdN1F3102.
       0.664
CBL43608.1
Hypothetical protein; silverDB:HdN1F29.
  
     0.628
CBL45472.1
Hypothetical protein; silverDB:HdN1F2492.
  
     0.616
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.