STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL46024.1Conserved hypothetical protein; silverDB:HdN1F3252. (177 aa)    
Predicted Functional Partners:
CBL46023.1
Predicted ATPase, AAA+ superfamily; silverDB:HdN1F3250.
       0.642
CBL43706.1
Conserved hypothetical protein; silverDB:HdN1F165; Belongs to the UPF0149 family.
  
     0.597
CBL45484.1
HAD-superfamily hydrolase subfamily IA, variant 3; silverDB:HdN1F2509.
  
     0.579
hflD
Protein of unknown function (DUF489); silverDB:HdN1F4587.
  
     0.464
mrcB
Penicillin-binding protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
  
     0.459
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
     0.448
CBL46022.1
ABC transporter, ATP-binding protein; silverDB:HdN1F3249.
       0.412
CBL46624.1
Conserved hypothetical protein; silverDB:HdN1F4075.
  
     0.412
CBL46625.1
Conserved hypothetical protein; silverDB:HdN1F4076.
  
     0.402
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.