STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilE3Type IV fimbrial biogenesis protein; silverDB:HdN1F4135; Belongs to the N-Me-Phe pilin family. (164 aa)    
Predicted Functional Partners:
pilQ
Fimbrial type-IV assembly protein, outer membran secretin; silverDB:HdN1F3103.
 
   
 0.737
CBL46670.1
Hypothetical protein; silverDB:HdN1F4136.
 
     0.688
pilD
Type IV fimbrial biogenesis protein, prepilin cysteine protease; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.673
pilM
Type IV fimbrial biogenesis protein, involved in pilus assembly; silverDB:HdN1F3099.
 
   
 0.637
pilC-2
Type IV fimbrial biogenesis membrane protein, involved in pilus assembly; silverDB:HdN1F4132.
 
   
 0.587
pilB
Type IV fimbrial biogenesis protein, ATPase; silverDB:HdN1F4133.
 
  
 0.582
pilO
Fimbrial type-IV assembly protein, involved in pilus assembly; silverDB:HdN1F3101.
  
   
 0.521
pilN
Type IV fimbrial biogenesis protein, involved in pilus assembly; silverDB:HdN1F3100.
  
   
 0.516
pilE1
Type IV fimbrial biogenesis protein; silverDB:HdN1F435.
 
   
 0.426
xkdP
Uncharacterized protein containing LysM domain; silverDB:HdN1F5010.
  
     0.408
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.