STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL46687.1Predicted transcriptional regulator; silverDB:HdN1F4158. (484 aa)    
Predicted Functional Partners:
CBL46377.1
Hypothetical protein; silverDB:HdN1F3749.
  
  
 
0.927
CBL45798.1
Conserved hypothetical protein; silverDB:HdN1F2947.
  
  
 
0.904
recG
RecG-like helicases; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.900
CBL46688.1
Hypothetical protein; silverDB:HdN1F4159.
 
     0.834
CBL46685.1
Predicted glycosyl transferase, group 1; silverDB:HdN1F4155.
  
    0.786
CBL46686.1
Predicted glycosyl transferase, group 1; silverDB:HdN1F4157.
  
    0.786
HDN1F_22140
Phage integrase, fragment; silverDB:HdN1F2944.
 
     0.763
ntrR
Nitrogen regulatory protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.675
ntrP
Nitrogen regulatory protein; silverDB:HdN1F4161.
       0.675
CBL46684.1
UDP-N-acetylglucosamine 2-epimerase; silverDB:HdN1F4154; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
    0.663
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.