Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBL46786.1MaoC-like protein; silverDB:HdN1F4281. (289 aa)    
Predicted Functional Partners:
CBL45097.1
Non-ribosomal peptide synthase; silverDB:HdN1F2001.
  
 
 0.929
CBL45096.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1999.
  
 
 0.913
eryA
Erythronolide synthase, modules 3 and 4; silverDB:HdN1F1309.
  
 0.903
CBL46953.1
MaoC-like dehydratase; silverDB:HdN1F4486.
     
 0.903
stiH
StiH protein; silverDB:HdN1F1310.
  
 0.849
CBL46791.1
Thiolase; silverDB:HdN1F4287; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.840
fabG2
Short-chain dehydrogenase/reductase SDR superfamily; silverDB:HdN1F4286.
 
  0.833
CBL46623.1
3-hydroxyacyl-CoA dehydrogenase; silverDB:HdN1F4074.
 
 0.752
CBL45095.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1998.
    
 0.734
CBL47206.1
Conserved hypothetical protein; silverDB:HdN1F4828.
  
 
 0.648
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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