STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL46786.1MaoC-like protein; silverDB:HdN1F4281. (289 aa)    
Predicted Functional Partners:
CBL46791.1
Thiolase; silverDB:HdN1F4287; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.835
fabG2
Short-chain dehydrogenase/reductase SDR superfamily; silverDB:HdN1F4286.
 
  0.808
CBL46623.1
3-hydroxyacyl-CoA dehydrogenase; silverDB:HdN1F4074.
 
 0.734
CBL47206.1
Conserved hypothetical protein; silverDB:HdN1F4828.
  
 
 0.621
fadB
Alpha subunit of fatty acid oxidation complex; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
 0.614
eryA
Erythronolide synthase, modules 3 and 4; silverDB:HdN1F1309.
  
 0.568
katA
Catalase; silverDB:HdN1F1582; Belongs to the catalase family.
   
 0.549
CBL45097.1
Non-ribosomal peptide synthase; silverDB:HdN1F2001.
   
 
 0.532
CBL47159.1
Short chain dehydrogenase family protein; silverDB:HdN1F4760; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   
 0.520
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.513
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.