Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
phoDsilverDB:HdN1F4284. (742 aa)    
Predicted Functional Partners:
CBL46009.1
GTP cyclohydrolase I, FolE; silverDB:HdN1F3226.
    
 0.911
folE
GTP cyclohydrolase I; silverDB:HdN1F3949.
    
 0.911
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.906
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
  0.900
CBL45185.1
Hypothetical protein; silverDB:HdN1F2124.
  
     0.639
CBL46648.1
Protein of unknown function DUF839; silverDB:HdN1F4111.
 
  
 0.633
CBL46787.1
Transcriptional regulator, AraC family; silverDB:HdN1F4282.
       0.489
CBL46789.1
Conserved hypothetical protein; silverDB:HdN1F4285.
       0.487
CBL43801.1
Conserved hypothetical protein; silverDB:HdN1F294.
  
     0.462
CBL44901.1
Hypothetical protein; silverDB:HdN1F1743.
  
     0.446
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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