Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
fadH2,4-dienoyl-CoA reductase; silverDB:HdN1F4288. (677 aa)    
Predicted Functional Partners:
glsI
Ferredoxin-dependent glutamate synthase; silverDB:HdN1F4117.
  
 0.999
etfB
Electron transfer flavoprotein, beta subunit; silverDB:HdN1F4530.
  
 
 0.914
CBL44844.1
Hypothetical protein; silverDB:HdN1F1658.
  
 
 0.896
etfA
Electron transfer flavoprotein, alpha subunit; silverDB:HdN1F4531.
   
 
 0.850
CBL44066.1
Predicted 4Fe-4S ferredoxin, iron-sulfur binding protein; silverDB:HdN1F609.
  
 0.847
CBL43848.1
Ferrodoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
   
 
 0.838
CBL46623.1
3-hydroxyacyl-CoA dehydrogenase; silverDB:HdN1F4074.
 
  
 0.819
narH
Nitrate reductase, beta subunit; silverDB:HdN1F1753.
    
 
 0.818
ddhB
Dimethylsulfide dehydrogenase beta subunit; silverDB:HdN1F2652.
    
 
 0.818
fadB
Alpha subunit of fatty acid oxidation complex; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
  
 0.811
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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