STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL46932.1Protein of unknown function (DUF433); silverDB:HdN1F4464. (74 aa)    
Predicted Functional Partners:
CBL46933.1
Conserved hypothetical protein; silverDB:HdN1F4465.
 
   
 0.960
CBL46673.1
Hypothetical protein; silverDB:HdN1F4139.
  
     0.672
CBL46727.1
Protein of unknown function (DUF497); silverDB:HdN1F4201.
  
     0.556
CBL45892.1
Hypothetical protein; silverDB:HdN1F3069.
  
     0.456
CBL43896.1
Conserved hypothetical protein; silverDB:HdN1F418.
  
     0.424
glnS
Glutaminyl-tRNA synthetase; silverDB:HdN1F4463.
       0.402
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.