STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL46977.1Carbohydrate kinase; silverDB:HdN1F4518. (530 aa)    
Predicted Functional Partners:
CBL46978.1
FAD-dependent glycerol-3-phosphate dehydrogenase; silverDB:HdN1F4519.
  
 0.952
CBL46979.1
FAD/FMN-containing dehydrogenase; silverDB:HdN1F4520.
 
   
 0.944
CBL46976.1
Cation efflux protein; silverDB:HdN1F4517.
 
    0.761
CBL44968.1
Hypothetical protein; silverDB:HdN1F1832.
  
 
 0.656
CBL46980.1
Transcriptional regulator; silverDB:HdN1F4521.
 
   
 0.643
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.577
CBL45573.1
FAD linked oxidase; silverDB:HdN1F2625.
 
   
 0.519
rpe
Ribulose-phosphate 3-epimerase; silverDB:HdN1F2771; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 
 0.506
CBL43634.1
D-ribose periplasmic binding protein precursor; silverDB:HdN1F61.
 
  
 0.493
glpD
Glycerol-3-phosphate dehydrogenase; silverDB:HdN1F4305; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.487
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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