STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL47083.1Lytic transglycosylase, catalytic; silverDB:HdN1F4656. (179 aa)    
Predicted Functional Partners:
CBL47082.1
Hypothetical protein; silverDB:HdN1F4655.
 
     0.941
CBL47084.1
Hypothetical protein; silverDB:HdN1F4657.
 
     0.922
CBL47086.1
Hypothetical protein; silverDB:HdN1F4660.
 
     0.908
CBL47085.1
Conserved hypothetical protein; silverDB:HdN1F4658.
 
   
 0.905
CBL47080.1
Hypothetical protein; silverDB:HdN1F4651.
 
     0.856
CBL47091.1
Probable phage associated protein; silverDB:HdN1F4666.
 
     0.791
CBL47093.1
Hypothetical protein; silverDB:HdN1F4668.
 
     0.786
CBL47092.1
Conserved hypothetical protein; silverDB:HdN1F4667.
 
     0.777
CBL45401.1
Hypothetical protein; silverDB:HdN1F2406.
 
     0.756
CBL45403.1
Hypothetical protein; silverDB:HdN1F2408.
 
     0.753
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.