STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL47245.1Transcriptional regulator; silverDB:HdN1F4876. (210 aa)    
Predicted Functional Partners:
HDN1F_36610
Hydrolase, fragment; silverDB:HdN1F4874.
       0.557
CBL45097.1
Non-ribosomal peptide synthase; silverDB:HdN1F2001.
 
   
 0.555
CBL45096.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1999.
 
   
 0.550
CBL46030.1
Putative cholesterol oxidase; silverDB:HdN1F3259.
  
  
 0.531
CBL45095.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1998.
 
   
 0.529
eryA
Erythronolide synthase, modules 3 and 4; silverDB:HdN1F1309.
 
   
 0.510
CBL43838.1
Transcriptional regulator; silverDB:HdN1F348.
  
   
 0.495
alkR
Putative araC-like transcription regulator; silverDB:HdN1F531.
  
     0.463
CBL45596.1
Hypothetical protein; silverDB:HdN1F2656; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.443
CBL45185.1
Hypothetical protein; silverDB:HdN1F2124.
  
     0.411
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.