Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBL47245.1Transcriptional regulator; silverDB:HdN1F4876. (210 aa)    
Predicted Functional Partners:
HDN1F_36610
Hydrolase, fragment; silverDB:HdN1F4874.
       0.557
CBL46030.1
Putative cholesterol oxidase; silverDB:HdN1F3259.
  
    0.530
CBL43838.1
Transcriptional regulator; silverDB:HdN1F348.
  
   
 0.493
CBL45097.1
Non-ribosomal peptide synthase; silverDB:HdN1F2001.
 
   
 0.482
eryA
Erythronolide synthase, modules 3 and 4; silverDB:HdN1F1309.
 
   
 0.481
alkR
Putative araC-like transcription regulator; silverDB:HdN1F531.
  
     0.463
CBL45596.1
Hypothetical protein; silverDB:HdN1F2656; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.443
CBL45096.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1999.
 
   
 0.432
CBL45095.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1998.
 
   
 0.412
CBL45185.1
Hypothetical protein; silverDB:HdN1F2124.
  
     0.411
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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