STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL47250.1Transcription regulation protein, GntR family; silverDB:HdN1F4882. (252 aa)    
Predicted Functional Partners:
npd
NAD-dependent deacetylase 2; silverDB:HdN1F1714.
 
    0.512
CBL47252.1
Alpha/beta hydrolase; silverDB:HdN1F4884.
 
     0.507
CBL47251.1
Putative monooxygenase; silverDB:HdN1F4883.
       0.504
CBL47271.1
Protein of unknown function DUF179; silverDB:HdN1F4911; Belongs to the UPF0301 (AlgH) family.
   
    0.468
CBL45533.1
Hypothetical protein; silverDB:HdN1F2571.
  
     0.458
CBL47249.1
Hypothetical protein; silverDB:HdN1F4881.
       0.446
CBL44465.1
Dienelactone hydrolase family protein; silverDB:HdN1F1159.
 
     0.439
CBL46990.1
Cytidyltransferase-related; silverDB:HdN1F4538; Belongs to the Nudix hydrolase family.
   
    0.438
CBL45844.1
Transcriptional regulator, AraC family; silverDB:HdN1F3006.
  
  
 0.403
CBL46170.1
Transcriptional regulator, AraC family; silverDB:HdN1F3456.
  
  
 0.403
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.