STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBL47251.1Putative monooxygenase; silverDB:HdN1F4883. (511 aa)    
Predicted Functional Partners:
CBL47252.1
Alpha/beta hydrolase; silverDB:HdN1F4884.
  
 0.766
CBL43801.1
Conserved hypothetical protein; silverDB:HdN1F294.
  
     0.697
CBL45096.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1999.
 
  
 0.564
CBL45097.1
Non-ribosomal peptide synthase; silverDB:HdN1F2001.
 
  
 0.564
CBL45329.1
Short-chain dehydrogenase; silverDB:HdN1F2307; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.560
CBL46882.1
Hypothetical protein; silverDB:HdN1F4401.
  
     0.555
CBL44614.1
Short-chain dehydrogenase; silverDB:HdN1F1353; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.544
CBL46538.1
Conserved hypothetical protein; silverDB:HdN1F3977.
  
     0.531
CBL46030.1
Putative cholesterol oxidase; silverDB:HdN1F3259.
 
  
 0.526
CBL47250.1
Transcription regulation protein, GntR family; silverDB:HdN1F4882.
       0.504
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
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