STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL47273.12OG-Fe(II) oxygenase; silverDB:HdN1F4913. (227 aa)    
Predicted Functional Partners:
CBL47275.1
TonB-dependent receptor; silverDB:HdN1F4915.
 
  
 0.977
CBL45095.1
Non-ribosomal peptide synthetase modules and related proteins; silverDB:HdN1F1998.
   
    0.793
CBL47274.1
FMN-dependent alpha-hydroxy acid dehydrogenase; silverDB:HdN1F4914.
 
  
 0.781
CBL46225.1
TonB-dependent receptor; silverDB:HdN1F3534.
 
  
 0.613
CBL47276.1
TonB-like protein; silverDB:HdN1F4918.
 
    0.543
CBL46373.1
TonB-dependent receptor protein; silverDB:HdN1F3745.
 
    0.522
exbD2
Biopolymer transport protein ExbD/TolR; silverDB:HdN1F4919.
  
    0.473
bfrI
Putative ferrisiderophore receptor; silverDB:HdN1F3363.
 
    0.437
CBL44040.1
Hypothetical protein; silverDB:HdN1F578.
  
    0.409
CBL44806.1
Hypothetical protein; silverDB:HdN1F1608.
  
    0.409
Your Current Organism:
gamma proteobacterium HdN1
NCBI taxonomy Id: 83406
Other names: g. proteobacterium HdN1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.