Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OJH42455.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (496 aa)    
Predicted Functional Partners:
OJH39227.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.839
OJH42456.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
BON30_17700
Alcohol dehydrogenase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
OJH33729.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.695
OJH42454.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.686
guaA
Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.680
OJH33733.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
OJH42861.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.643
OJH38053.1
Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.632
OJH38713.1
Taurine catabolism dioxygenase TauD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.622
Your Current Organism:
Cystobacter ferrugineus
NCBI taxonomy Id: 83449
Other names: C. ferrugineus, DSM 14716, JCM 12624, Polyangium ferrugineum, strain Cb fe18, strain Windsor M-203
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