Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OJH40868.1Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)    
Predicted Functional Partners:
OJH41594.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.779
OJH40869.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.760
OJH40438.1
Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.675
OJH40867.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.636
OJH41593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.636
OJH40437.1
Secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.588
OJH40592.1
Secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.538
OJH35034.1
Pilus assembly protein TadA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.522
OJH36134.1
Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.493
OJH40870.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
Your Current Organism:
Cystobacter ferrugineus
NCBI taxonomy Id: 83449
Other names: C. ferrugineus, DSM 14716, JCM 12624, Polyangium ferrugineum, strain Cb fe18, strain Windsor M-203
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