STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJH39417.1General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)    
Predicted Functional Partners:
OJH39418.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.981
OJH39420.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.981
OJH39419.1
Prokaryotic N-terminal methylation motif domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.979
OJH39416.1
General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.946
OJH39421.1
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.913
OJH39772.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.910
OJH39773.1
General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.895
OJH39415.1
General secretion pathway protein M; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.859
OJH39425.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.858
BON30_18075
MFS transporter; Frameshifted; incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.812
Your Current Organism:
Cystobacter ferrugineus
NCBI taxonomy Id: 83449
Other names: C. ferrugineus, DSM 14716, JCM 12624, Polyangium ferrugineum, strain Cb fe18, strain Windsor M-203
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.