STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbm39.LUncharacterized protein. (540 aa)    
Predicted Functional Partners:
dcaf15
DCAF15_WD40 domain-containing protein.
    
 
 0.952
Paxbp1.L
GCFC domain-containing protein.
   
 
 0.884
rbm25-2
RNPC7 protein.
   
0.878
rbm25
Uncharacterized protein.
   
0.873
Son.S
Uncharacterized protein.
   
  0.873
A0A1L8HCI1
Uncharacterized protein.
   
  0.873
luc7l
Luc7l protein.
   
 0.872
cdc5l
Cdc5l protein.
   
 
 0.852
Cdc5l.L
Uncharacterized protein.
   
 
 0.851
Ddx5.S
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.827
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.