STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd40-2ANK_REP_REGION domain-containing protein. (346 aa)    
Predicted Functional Partners:
A0A1L8GPQ4
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.908
sec13
Sec13l1-prov protein; Belongs to the WD repeat SEC13 family.
    
 0.908
A0A1L8GRB6
Uncharacterized protein.
   
 0.851
sec24a
Uncharacterized protein.
   
 0.851
sec24b
Uncharacterized protein.
   
 0.851
sec24b-2
Uncharacterized protein.
   
 0.851
A0A1L8FJW8
Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.820
sar1a
MGC82076 protein; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.820
sar1b
Sar1a-prov protein; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.820
A0A1L8F457
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.797
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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