A0A1L8F437 protein (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1L8F437

Uncharacterized protein. (1652 aa)

Predicted Functional Partners:

unc79

0.578

setd7

0.552

ccdc28b

0.552

gtf2f1

0.540

Epac

0.525

Rapgef3.L

0.525

cops7b

0.480

A0A1L8G867

0.479

A0A1L8G8C8

0.479

A0A1L8H8J4

0.472

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F437	A0A1L8G867	A0A1L8F437	A0A1L8G867	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A1L8F437	A0A1L8G8C8	A0A1L8F437	A0A1L8G8C8	Uncharacterized protein.	AKAP7_RIRII_bdg domain-containing protein.	0.479
A0A1L8F437	A0A1L8H8J4	A0A1L8F437	A0A1L8H8J4	Uncharacterized protein.	Tudor domain-containing protein.	0.472
A0A1L8F437	Epac	A0A1L8F437	A0A1L8HA96	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A1L8F437	Rapgef3.L	A0A1L8F437	A0A1L8HIB9	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A1L8F437	ccdc28b	A0A1L8F437	Q6GLS3	Uncharacterized protein.	MGC84316 protein.	0.552
A0A1L8F437	cops7b	A0A1L8F437	Q498I8	Uncharacterized protein.	MGC114836 protein.	0.480
A0A1L8F437	gtf2f1	A0A1L8F437	A0A1L8H2Z7	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.540
A0A1L8F437	setd7	A0A1L8F437	A0A1L8HUK6	Uncharacterized protein.	SET domain-containing protein.	0.552
A0A1L8F437	unc79	A0A1L8F437	A0A1L8F9J5	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A1L8G867	A0A1L8F437	A0A1L8G867	A0A1L8F437	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A1L8G867	A0A1L8H8J4	A0A1L8G867	A0A1L8H8J4	Uncharacterized protein.	Tudor domain-containing protein.	0.472
A0A1L8G8C8	A0A1L8F437	A0A1L8G8C8	A0A1L8F437	AKAP7_RIRII_bdg domain-containing protein.	Uncharacterized protein.	0.479
A0A1L8G8C8	A0A1L8H8J4	A0A1L8G8C8	A0A1L8H8J4	AKAP7_RIRII_bdg domain-containing protein.	Tudor domain-containing protein.	0.472
A0A1L8H8J4	A0A1L8F437	A0A1L8H8J4	A0A1L8F437	Tudor domain-containing protein.	Uncharacterized protein.	0.472
A0A1L8H8J4	A0A1L8G867	A0A1L8H8J4	A0A1L8G867	Tudor domain-containing protein.	Uncharacterized protein.	0.472
A0A1L8H8J4	A0A1L8G8C8	A0A1L8H8J4	A0A1L8G8C8	Tudor domain-containing protein.	AKAP7_RIRII_bdg domain-containing protein.	0.472
A0A1L8H8J4	Epac	A0A1L8H8J4	A0A1L8HA96	Tudor domain-containing protein.	Uncharacterized protein.	0.480
A0A1L8H8J4	Rapgef3.L	A0A1L8H8J4	A0A1L8HIB9	Tudor domain-containing protein.	Uncharacterized protein.	0.480
Epac	A0A1L8F437	A0A1L8HA96	A0A1L8F437	Uncharacterized protein.	Uncharacterized protein.	0.525