A0A1L8FGH7 protein (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1L8FGH7

V-SNARE coiled-coil homology domain-containing protein. (191 aa)

Predicted Functional Partners:

snap25

0.967

snap25-2

0.967

snap23

0.956

A0A1L8F996

0.920

Nsf

0.891

stx16

0.891

stx16-2

0.891

A0A1L8FDN1

0.889

Vti1a.L

0.889

A0A1L8G5M3

0.878

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F996	A0A1L8FGH7	A0A1L8F996	A0A1L8FGH7	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	V-SNARE coiled-coil homology domain-containing protein.	0.920
A0A1L8F996	A0A1L8G5M3	A0A1L8F996	A0A1L8G5M3	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Uncharacterized protein.	0.533
A0A1L8F996	Nsf	A0A1L8F996	A0A1L8ELA3	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Uncharacterized protein.	0.796
A0A1L8F996	stx16	A0A1L8F996	A0A1L8ELR8	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.505
A0A1L8F996	stx16-2	A0A1L8F996	A0A1L8ESZ6	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.556
A0A1L8FDN1	A0A1L8FGH7	A0A1L8FDN1	A0A1L8FGH7	V-SNARE domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.889
A0A1L8FDN1	Nsf	A0A1L8FDN1	A0A1L8ELA3	V-SNARE domain-containing protein.	Uncharacterized protein.	0.869
A0A1L8FDN1	Vti1a.L	A0A1L8FDN1	A0A1L8FI41	V-SNARE domain-containing protein.	V-SNARE domain-containing protein.	0.901
A0A1L8FDN1	stx16	A0A1L8FDN1	A0A1L8ELR8	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.962
A0A1L8FDN1	stx16-2	A0A1L8FDN1	A0A1L8ESZ6	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.992
A0A1L8FGH7	A0A1L8F996	A0A1L8FGH7	A0A1L8F996	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.920
A0A1L8FGH7	A0A1L8FDN1	A0A1L8FGH7	A0A1L8FDN1	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE domain-containing protein.	0.889
A0A1L8FGH7	A0A1L8G5M3	A0A1L8FGH7	A0A1L8G5M3	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.878
A0A1L8FGH7	Nsf	A0A1L8FGH7	A0A1L8ELA3	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.891
A0A1L8FGH7	Vti1a.L	A0A1L8FGH7	A0A1L8FI41	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE domain-containing protein.	0.889
A0A1L8FGH7	snap23	A0A1L8FGH7	Q8JIS7	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.956
A0A1L8FGH7	snap25	A0A1L8FGH7	Q640W4	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.967
A0A1L8FGH7	snap25-2	A0A1L8FGH7	Q8AXM1	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.967
A0A1L8FGH7	stx16	A0A1L8FGH7	A0A1L8ELR8	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.891
A0A1L8FGH7	stx16-2	A0A1L8FGH7	A0A1L8ESZ6	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.891