STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vim.SIF rod domain-containing protein; Belongs to the intermediate filament family. (463 aa)    
Predicted Functional Partners:
Cdh2.L
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.677
Zeb1.S
Uncharacterized protein.
      
 0.646
cdh2
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.628
cdh3
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.595
cdh1
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.594
emd
Xemd1 protein.
    
 0.590
snai2-2
Zinc finger transcription factor slug beta.
   
  
 0.577
snai2
Uncharacterized protein.
      
 0.574
twist1
BHLH domain-containing protein.
    
 
 0.549
twist1-2
LOC100036981 protein.
    
 
 0.542
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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