STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acbd5.LAcyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters. (464 aa)    
Predicted Functional Partners:
Vapb.L
MSP domain-containing protein.
    
 
 0.795
Vps13a.L
Uncharacterized protein.
      
 0.795
pdzd8
Uncharacterized protein.
      
 0.794
Vapa.L
MSP domain-containing protein.
    
 
 0.779
Pex16.S
Peroxisomal membrane protein PEX16.
   
 0.768
pex3
MGC82731 protein.
    
 0.765
pex13
SH3 domain-containing protein.
   
 0.752
pex14
Pex14_N domain-containing protein.
   
 0.746
Pex14.L
Pex14_N domain-containing protein.
   
 0.746
gdap1
Uncharacterized protein; Belongs to the GST superfamily.
     
 0.738
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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