STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
u2surpUncharacterized protein. (966 aa)    
Predicted Functional Partners:
Cherp.L
Uncharacterized protein.
   
 0.970
rbm17
LOC733282 protein.
   
 0.954
rbm17-2
MGC84102 protein.
   
 0.954
U2surp.L
Uncharacterized protein.
  
  
 
0.900
Ddx46.L
Uncharacterized protein.
   
 0.865
sf3a2
LOC100101277 protein.
    
 0.843
sf3a2-2
Sf3a2-prov protein.
    
 0.843
dhx15
Uncharacterized protein.
   
 0.834
dhx15-2
MGC81281 protein.
   
 0.834
sf3b1
SF3b1 domain-containing protein.
   
 0.833
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.