STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc40Uncharacterized protein. (605 aa)    
Predicted Functional Partners:
Spef2.L
Calponin-homology (CH) domain-containing protein.
    
 0.895
cnpy3
DUF3456 domain-containing protein.
    
 0.794
dmrta2
DM domain-containing protein.
      
 0.791
dmrt3
DM domain-containing protein.
      
 0.729
dmrt3-2
DM domain-containing protein.
      
 0.729
wls
Uncharacterized protein.
      
 0.682
Wls.L
Uncharacterized protein.
      
 0.682
Dmrta1.S
DM domain-containing protein.
      
 0.677
dmrta1
DM domain-containing protein.
      
 0.677
dmrta1-2
Doublesex and mab-3 related transcription factor 5.
      
 0.675
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.