A0A1L8GTQ4 protein (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1L8GTQ4

Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (446 aa)

Predicted Functional Partners:

rab1a

0.968

rab33b

0.840

Rab33b.L

0.840

rab8a

0.831

Ankfy1.S

0.825

ankfy1

0.820

rab35l

0.809

rabgef1

0.806

rabgef1-2

0.806

rab33a

0.798

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GTQ4	Ankfy1.S	A0A1L8GTQ4	A0A1L8H8C4	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.825
A0A1L8GTQ4	Rab33b.L	A0A1L8GTQ4	A0A1L8HUP7	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.840
A0A1L8GTQ4	ankfy1	A0A1L8GTQ4	A0A1L8HGA0	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.820
A0A1L8GTQ4	rab1a	A0A1L8GTQ4	Q7ZXF7	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab1-prov protein.	0.968
A0A1L8GTQ4	rab33a	A0A1L8GTQ4	Q6DJF1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	MGC84415 protein.	0.798
A0A1L8GTQ4	rab33b	A0A1L8GTQ4	A0A1L8HLW3	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.840
A0A1L8GTQ4	rab35l	A0A1L8GTQ4	A0A1L8I076	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.809
A0A1L8GTQ4	rab8a	A0A1L8GTQ4	A0A1L8HNL2	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.831
A0A1L8GTQ4	rabgef1	A0A1L8GTQ4	A0A1L8H682	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.806
A0A1L8GTQ4	rabgef1-2	A0A1L8GTQ4	Q4V7X1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	MGC114998 protein.	0.806
Ankfy1.S	A0A1L8GTQ4	A0A1L8H8C4	A0A1L8GTQ4	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.825
Ankfy1.S	rab1a	A0A1L8H8C4	Q7ZXF7	Uncharacterized protein.	Rab1-prov protein.	0.452
Ankfy1.S	rabgef1	A0A1L8H8C4	A0A1L8H682	Uncharacterized protein.	Uncharacterized protein.	0.600
Ankfy1.S	rabgef1-2	A0A1L8H8C4	Q4V7X1	Uncharacterized protein.	MGC114998 protein.	0.600
Rab33b.L	A0A1L8GTQ4	A0A1L8HUP7	A0A1L8GTQ4	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.840
Rab33b.L	rab33a	A0A1L8HUP7	Q6DJF1	Uncharacterized protein.	MGC84415 protein.	0.805
Rab33b.L	rab33b	A0A1L8HUP7	A0A1L8HLW3	Uncharacterized protein.	Uncharacterized protein.	0.900
Rab33b.L	rab8a	A0A1L8HUP7	A0A1L8HNL2	Uncharacterized protein.	Uncharacterized protein.	0.408
ankfy1	A0A1L8GTQ4	A0A1L8HGA0	A0A1L8GTQ4	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.820
ankfy1	rab1a	A0A1L8HGA0	Q7ZXF7	Uncharacterized protein.	Rab1-prov protein.	0.444

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About