A0A1L8GTU8 protein (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1L8GTU8

MARVEL domain-containing protein. (170 aa)

Predicted Functional Partners:

gtf2f1

0.561

A0A1L8G4Z3

0.546

A0A1L8GAY1

0.546

Vamp2.L

0.546

A0A310TKY4

0.546

ctxn1

0.408

A0A1L8FGH7

0.404

A0A1L8GHL6

0.404

Grip2.L

0.404

vamp1

0.404

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FGH7	A0A1L8G4Z3	A0A1L8FGH7	A0A1L8G4Z3	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.736
A0A1L8FGH7	A0A1L8GAY1	A0A1L8FGH7	A0A1L8GAY1	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.736
A0A1L8FGH7	A0A1L8GTU8	A0A1L8FGH7	A0A1L8GTU8	V-SNARE coiled-coil homology domain-containing protein.	MARVEL domain-containing protein.	0.404
A0A1L8FGH7	A0A310TKY4	A0A1L8FGH7	A0A310TKY4	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.736
A0A1L8FGH7	Vamp2.L	A0A1L8FGH7	A0A1L8H3D6	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.747
A0A1L8G4Z3	A0A1L8FGH7	A0A1L8G4Z3	A0A1L8FGH7	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.736
A0A1L8G4Z3	A0A1L8GTU8	A0A1L8G4Z3	A0A1L8GTU8	V-SNARE coiled-coil homology domain-containing protein.	MARVEL domain-containing protein.	0.546
A0A1L8G4Z3	vamp1	A0A1L8G4Z3	Q5XH53	V-SNARE coiled-coil homology domain-containing protein.	LOC495063 protein.	0.804
A0A1L8GAY1	A0A1L8FGH7	A0A1L8GAY1	A0A1L8FGH7	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.736
A0A1L8GAY1	A0A1L8GTU8	A0A1L8GAY1	A0A1L8GTU8	V-SNARE coiled-coil homology domain-containing protein.	MARVEL domain-containing protein.	0.546
A0A1L8GAY1	vamp1	A0A1L8GAY1	Q5XH53	V-SNARE coiled-coil homology domain-containing protein.	LOC495063 protein.	0.804
A0A1L8GHL6	A0A1L8GTU8	A0A1L8GHL6	A0A1L8GTU8	Uncharacterized protein.	MARVEL domain-containing protein.	0.404
A0A1L8GHL6	gtf2f1	A0A1L8GHL6	A0A1L8H2Z7	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.523
A0A1L8GTU8	A0A1L8FGH7	A0A1L8GTU8	A0A1L8FGH7	MARVEL domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.404
A0A1L8GTU8	A0A1L8G4Z3	A0A1L8GTU8	A0A1L8G4Z3	MARVEL domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.546
A0A1L8GTU8	A0A1L8GAY1	A0A1L8GTU8	A0A1L8GAY1	MARVEL domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.546
A0A1L8GTU8	A0A1L8GHL6	A0A1L8GTU8	A0A1L8GHL6	MARVEL domain-containing protein.	Uncharacterized protein.	0.404
A0A1L8GTU8	A0A310TKY4	A0A1L8GTU8	A0A310TKY4	MARVEL domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.546
A0A1L8GTU8	Grip2.L	A0A1L8GTU8	A0A1L8GPK3	MARVEL domain-containing protein.	Uncharacterized protein.	0.404
A0A1L8GTU8	Vamp2.L	A0A1L8GTU8	A0A1L8H3D6	MARVEL domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.546