ppa1 protein (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ppa1

Uncharacterized protein. (334 aa)

Predicted Functional Partners:

atp5po

0.838

atp5po-2

0.838

Atp5a1.S

0.823

atp5f1a

0.823

atp5f1c

0.806

atp5f1c-2

0.806

mrpl12

0.803

atp6v0b

0.792

atp6v0b-2

0.792

Eef1g.S

0.787

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atp5a1.S	Eef1g.S	A0A1L8HS35	A0A1L8GCN0	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.455
Atp5a1.S	atp5f1a	A0A1L8HS35	Q68EY5	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
Atp5a1.S	atp5f1c	A0A1L8HS35	A0A1L8GTR1	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
Atp5a1.S	atp5f1c-2	A0A1L8HS35	Q6INB6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
Atp5a1.S	atp5po	A0A1L8HS35	A0A1L8H5G8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.998
Atp5a1.S	atp5po-2	A0A1L8HS35	Q3KQC0	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	LOC414601 protein.	0.998
Atp5a1.S	atp6v0b	A0A1L8HS35	A0A1L8GFV7	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	0.947
Atp5a1.S	atp6v0b-2	A0A1L8HS35	Q66IW6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	MGC84266 protein; Belongs to the V-ATPase proteolipid subunit family.	0.947
Atp5a1.S	mrpl12	A0A1L8HS35	Q5U556	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	LOC495364 protein.	0.869
Atp5a1.S	ppa1	A0A1L8HS35	A0A1L8HUY4	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.823
Eef1g.S	Atp5a1.S	A0A1L8GCN0	A0A1L8HS35	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.455
Eef1g.S	atp5f1a	A0A1L8GCN0	Q68EY5	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.455
Eef1g.S	atp5po	A0A1L8GCN0	A0A1L8H5G8	Uncharacterized protein.	Uncharacterized protein.	0.440
Eef1g.S	atp5po-2	A0A1L8GCN0	Q3KQC0	Uncharacterized protein.	LOC414601 protein.	0.440
Eef1g.S	ppa1	A0A1L8GCN0	A0A1L8HUY4	Uncharacterized protein.	Uncharacterized protein.	0.787
atp5f1a	Atp5a1.S	Q68EY5	A0A1L8HS35	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
atp5f1a	Eef1g.S	Q68EY5	A0A1L8GCN0	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.455
atp5f1a	atp5f1c	Q68EY5	A0A1L8GTR1	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
atp5f1a	atp5f1c-2	Q68EY5	Q6INB6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
atp5f1a	atp5po	Q68EY5	A0A1L8H5G8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.999