STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoh7Atonal homolog 5a. (138 aa)    
Predicted Functional Partners:
vsx2
Uncharacterized protein.
   
  
 0.858
vsx1
Uncharacterized protein.
   
  
 0.848
pax6-2
Uncharacterized protein.
      
 0.836
six6
Six6-A protein.
   
  
 0.818
Crx.L
Homeobox domain-containing protein.
   
  
 0.813
pax6
Uncharacterized protein.
      
 0.813
six3
Homeobox transcription factor Six3.
   
  
 0.811
Vsx2.L
Uncharacterized protein.
   
  
 0.809
crx
Homeobox domain-containing protein.
      
 0.806
Six3.1
Homeobox domain-containing protein.
   
  
 0.767
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.