STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001700965_00480Unannotated protein. (229 aa)    
Predicted Functional Partners:
GCA_001700965_03106
Unannotated protein.
  
  
 0.957
GCA_001700965_00479
Unannotated protein.
       0.830
GCA_001700965_00481
Unannotated protein.
       0.825
GCA_001700965_00482
Unannotated protein.
  
 
  0.732
GCA_001700965_00046
Unannotated protein.
  
  
  0.624
GCA_001700965_03668
Unannotated protein.
    
 0.609
GCA_001700965_00483
Unannotated protein.
  
    0.586
GCA_001700965_03803
Unannotated protein.
    
  0.567
GCA_001700965_01029
Unannotated protein.
  
  
 
0.502
GCA_001700965_02544
Unannotated protein.
  
  
 
0.481
Your Current Organism:
Stenotrophomonas nitritireducens
NCBI taxonomy Id: 83617
Other names: ATCC BAA-12, CCUG 46888, CIP 107228, DSM 12575, JCM 13311, S. nitritireducens, Stenotrophomonas nitritireducens Finkmann et al. 2000, strain L2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.