STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001700965_01063Unannotated protein. (709 aa)    
Predicted Functional Partners:
GCA_001700965_00924
Unannotated protein.
   
 
 0.923
GCA_001700965_00943
Unannotated protein.
 
  
 0.894
GCA_001700965_02129
Unannotated protein.
 
  
 0.864
GCA_001700965_02281
Unannotated protein.
   
 
 0.857
GCA_001700965_02039
Unannotated protein.
 
  
 0.853
GCA_001700965_00496
Unannotated protein.
  
  
 0.814
GCA_001700965_00941
Unannotated protein.
  
 
 0.806
GCA_001700965_03816
Unannotated protein.
    
 0.783
GCA_001700965_03613
Unannotated protein.
    
 0.769
GCA_001700965_01685
Unannotated protein.
    
 0.766
Your Current Organism:
Stenotrophomonas nitritireducens
NCBI taxonomy Id: 83617
Other names: ATCC BAA-12, CCUG 46888, CIP 107228, DSM 12575, JCM 13311, S. nitritireducens, Stenotrophomonas nitritireducens Finkmann et al. 2000, strain L2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.