STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001700965_03365Unannotated protein. (123 aa)    
Predicted Functional Partners:
GCA_001700965_01507
Unannotated protein.
  
    0.608
GCA_001700965_03364
Unannotated protein.
       0.600
GCA_001700965_00897
Unannotated protein.
   
  
 0.503
GCA_001700965_00474
Unannotated protein.
  
     0.500
GCA_001700965_03294
Unannotated protein.
  
     0.476
GCA_001700965_02424
Unannotated protein.
  
     0.466
GCA_001700965_03305
Unannotated protein.
 
  
 0.462
GCA_001700965_03363
Unannotated protein.
       0.421
GCA_001700965_01717
Unannotated protein.
  
    0.403
GCA_001700965_01718
Unannotated protein.
  
     0.401
Your Current Organism:
Stenotrophomonas nitritireducens
NCBI taxonomy Id: 83617
Other names: ATCC BAA-12, CCUG 46888, CIP 107228, DSM 12575, JCM 13311, S. nitritireducens, Stenotrophomonas nitritireducens Finkmann et al. 2000, strain L2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.