STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx10RNA helicase. (852 aa)    
Predicted Functional Partners:
esf1
Collagen, type XII, alpha 1.
   
 
 0.996
utp14a
Uncharacterized protein.
   
 
 0.992
nom1
EF-hand domain family member D2.
   
 
 0.974
mis18bp1
Ceroid-lipofuscinosis, neuronal 3.
   
 
 0.963
utp3
Amyloid beta (A4) precursor protein-binding, family A, member 2.
   
 
 0.962
aatf
Uncharacterized protein.
   
 
 0.959
nol6
Nucleolar protein 6; Belongs to the NRAP family.
   
 
 0.958
nol10
Nucleolar protein 10.
   
 
 0.954
utp18
WD_REPEATS_REGION domain-containing protein.
   
 
 0.952
bysl
UDP-glucose pyrophosphorylase 2.
   
 
 0.948
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.