STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc37Uncharacterized protein. (1562 aa)    
Predicted Functional Partners:
SKIV2L
Ski2 like RNA helicase.
   
 
 0.997
wdr61
WD repeat-containing protein 61.
    
 
 0.996
MTREX
Mtr4 exosome RNA helicase.
   
 
 0.859
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.823
xrn1
Ribosomal protein L29.
    
 
 0.804
rack1
Guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1.
    
   0.802
hbs1l
Tr-type G domain-containing protein.
    
 
 0.782
exosc9
ER lumen protein-retaining receptor 3.
    
 
 0.745
exosc1
LOC100170616 protein.
      
 0.727
exosc10
Sigma non-opioid intracellular receptor 1.
      
 0.727
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.