STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM240Transmembrane protein 240. (149 aa)    
Predicted Functional Partners:
twf2
WD repeat-containing protein 82; Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus; Belongs to the WD repeat SWD2 family.
   
 
 0.863
cpsf3
Uncharacterized protein.
   
 
 0.836
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.835
mypop
VPS8, CORVET complex subunit.
   
 
 0.835
pcf11
Pcf11 protein.
   
 
 0.832
LOC100491532
Histamine N-methyltransferase.
    
 
 0.826
ntf4-2
Neurotrophin 4.
    
 
 0.824
rbbp6
Uncharacterized protein.
    
 
 0.808
cstf2
Minichromosome maintenance complex component 3 associated protein.
   
 
 0.792
gins2
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
    
 
 0.748
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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