STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (916 aa)    
Predicted Functional Partners:
seh1l
Nucleoporin SEH1; Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore. Belongs to the WD repeat SEC13 family.
   
 0.999
nup37
Protein kinase C iota.
   
 0.999
NUP133
Nucleoporin 133.
   
 
 0.999
ranbp2
Mucolipin 2.
   
 
 0.998
LOC105947166
Glucosaminyl (N-acetyl) transferase 3, mucin type.
   
 
 0.997
nup85
Nuclear pore complex protein Nup85; Component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance (By similarity). Involved in nephrogenesis ; Belongs to the nucleoporin Nup85 family.
   
 
 0.997
nup43
Cysteine dioxygenase type 1.
   
 
 0.997
nup98
Peptidase S59 domain-containing protein.
   
 
 0.996
sec13
SEC13-like 1 (S. cerevisiae); Belongs to the WD repeat SEC13 family.
   
 
 0.996
nup214
Forkhead box L1.
   
 
 0.994
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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