STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpat3Heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A). (448 aa)    
Predicted Functional Partners:
gpat2
Deoxynucleotidyltransferase, terminal, interacting protein 1.
  
 
 0.963
gpd1l
Glycerol-3-phosphate dehydrogenase 1-like protein; Plays a role in regulating cardiac sodium current.
  
 
 0.933
gpd1
Glycerol-3-phosphate dehydrogenase [NAD(+)].
  
 
 0.933
gk
Extended synaptotagmin-like protein 1; Belongs to the FGGY kinase family.
    
 0.926
gpd2
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.917
Agk
Uncharacterized protein.
    
 0.905
gpat4
LOC100170573 protein.
  
  
 
0.901
adprm.2
Potassium channel tetramerization domain containing 7.
     
  0.900
adprm
Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase; Hydrolyzes ADP-ribose, IDP-ribose, CDP-glycerol, CDP-choline and CDP-ethanolamine, but not other non-reducing ADP-sugars or CDP- glucose.
     
  0.900
agpat5
Meningioma (disrupted in balanced translocation) 1.
     
 0.828
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.