STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk10Uncharacterized protein. (638 aa)    
Predicted Functional Partners:
ccnl2
Cyclin-L2; Involved in pre-mRNA splicing.
   
 
 0.547
PRPF3
Pre-mRNA processing factor 3.
   
  
 0.546
ccnl1
Zinc finger and BTB domain containing 49; Belongs to the cyclin family.
   
 
 0.529
ccnk
Uncharacterized protein; Belongs to the cyclin family.
   
 
 0.471
slc35e3
TPT domain-containing protein.
      
 0.463
ccnq
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
 
 0.438
znf276
THO complex subunit 7 homolog.
      
 0.410
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.