STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prickle1-2Peroxisomal trans-2-enoyl-CoA reductase. (136 aa)    
Predicted Functional Partners:
ramp1
Uncharacterized protein.
    
 
 0.789
ppie
Peptidylprolyl isomerase E (cyclophilin E).
    
 
 0.787
ramp3
Uncharacterized protein.
    
 
 0.785
CALCB
CALCITONIN domain-containing protein.
    
 
 0.748
gnas
ATPase family AAA domain-containing protein 1.
    
 
 0.741
adm
Growth differentiation factor 3.
    
 
 0.695
ENSXETP00000014126
Uncharacterized protein.
    
 
 0.604
gng2
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
    
   0.570
gnb1
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
    
   0.560
gnb4
LOC549706 protein.
    
   0.560
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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