STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adh4NK2 homeobox 1. (392 aa)    
Predicted Functional Partners:
aldh3b1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.934
aldh3b2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.934
LOC100488563
SET domain bifurcated 1.
  
 
 0.903
retsat
LOC100158500 protein.
  
 
 0.903
BCO1
Beta-carotene oxygenase 1.
   
 
  0.902
lrat
Lecithin retinol acyltransferase.
   
 
 0.901
PNPLA4
Patatin like phospholipase domain containing 4.
     
  0.900
cyp27c1
SprT-like domain-containing protein Spartan; Belongs to the cytochrome P450 family.
    
  0.900
esd
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
 0.824
aldh7a1
SMAD family member 7; Belongs to the aldehyde dehydrogenase family.
  
 0.778
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.