STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPN5Opsin 5; Belongs to the G-protein coupled receptor 1 family. (345 aa)    
Predicted Functional Partners:
FNDC3A
Fibronectin type III domain containing 3A.
    
  0.517
mitf
Importin 9.
     
 0.514
rps27a
Ribosomal protein S27a.
   
  0.506
rac2
Ras-related C3 botulinum toxin substrate 2 (Rho family, small GTP binding protein Rac2).
    
  0.502
KCNN2
Potassium calcium-activated channel subfamily N member 2.
   
 
  0.501
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
    
  0.501
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
     
  0.499
nt5dc2
LOC100124988 protein.
     
  0.499
QARS1
Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
  0.499
pik3r3
Phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (P55, gamma).
     
  0.499
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.