STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldh1a3Protein phosphatase 1 regulatory subunit 7; Belongs to the aldehyde dehydrogenase family. (512 aa)    
Predicted Functional Partners:
cyp26b1
Cytochrome P450 26B1; Plays a key role in retinoic acid metabolism. Appears to be involved in the inactivation of all-trans-retinoic acid (RA).
   
 
 0.944
sdr16c5
MGC89296 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.941
aox1
Aldehyde oxidase 1.
   
 
 0.937
LOC100493336
FAD-binding PCMH-type domain-containing protein.
   
 
 0.937
aox1-2
Uncharacterized protein.
   
 
 0.937
dhrs3
Dehydrogenase/reductase (SDR family) member 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.931
dhrs4
Uncharacterized protein.
  
 0.927
BCO1
Beta-carotene oxygenase 1.
   
 
 0.924
cyp3a5
Uncharacterized protein; Belongs to the cytochrome P450 family.
   
 
 0.920
cyp3a4.2
Protein NDRG3; Belongs to the cytochrome P450 family.
   
 
 0.920
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.