STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3b3CPSF_A domain-containing protein. (1217 aa)    
Predicted Functional Partners:
sf3b2
STT3B, catalytic subunit of the oligosaccharyltransferase complex.
   
 0.999
sf3b6
Splicing factor 3B, 14 kDa subunit (Sf3b14).
    
 0.999
sf3b4
Homeobox A3.
   
 0.999
phf5a
LOC100170460 protein.
   
 0.999
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 
 0.997
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.996
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.996
sf3a3
Matrin-type domain-containing protein.
   
 
 0.996
sf3a2
Tubulin tyrosine ligase.
   
 
 0.995
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.