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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cep85lCalcium/calmodulin dependent protein kinase ID. (719 aa)    
Predicted Functional Partners:
RBMS2
RNA binding motif single stranded interacting protein 2.
     
  0.900
pdgfb-2
Frizzled related protein; Belongs to the PDGF/VEGF growth factor family.
     
 0.802
mcm10
Protein MCM10 homolog; Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication (By similarity).
     
  0.800
cyfip2
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
     
 0.800
gdnf-2
KN motif and ankyrin repeat domains 4.
     
  0.800
nrg3
Dachshund family transcription factor 1.
     
  0.800
brwd1
Chromatin assembly factor 1 subunit B.
     
  0.800
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
     
  0.800
cryba1.2
Uncharacterized protein; Belongs to the beta/gamma-crystallin family.
     
  0.800
mitf
Importin 9.
     
  0.750
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.