STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
darminM20_dimer domain-containing protein. (489 aa)    
Predicted Functional Partners:
abat
LOC100158654 protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.931
upb1
LOC100145317 protein.
    
 0.927
hal.1
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
    
 0.921
hdc
R3H domain-containing 2.
   
 
 0.920
gadl1
Acidic amino acid decarboxylase GADL1; Catalyzes the decarboxylation of L-aspartate, 3-sulfino-L- alanine (cysteine sulfinic acid), and L-cysteate to beta-alanine, hypotaurine and taurine, respectively. The preferred substrate is L- aspartate. Does not exhibit any decarboxylation activity toward glutamate.
   
 
 0.913
gad1.1
Matrix-remodelling-associated 5.
   
 
 0.913
gad1.2
Cadherin 22.
   
 
 0.913
gad2
Peptidoglycan recognition protein 1.
   
 
 0.913
ALDH1B1
Aldehyde dehydrogenase 1 family member B1; Belongs to the aldehyde dehydrogenase family.
    
 0.909
aldh16a1
Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.
    
 0.909
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.